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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15503349_15503677_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15503349 - 15503677
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGTG
5'SS Class:
major
3'SS Sequence:
CCAAACACTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCCTGACC
Flanking Amino Acid:
MRATAEDFNKVMQVVREQIT
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
69.9
41.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
57.4
0.17
0.9
52.1
37.3
Minor 5ss
29.5
-2.4
3.3
38.5
46.5
Minor BPS
59.5
0.28
1.8
71.71
39.5

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486