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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15503815_15504429_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15503815 - 15504429
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTATTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCTGTTTATT
Flanking Amino Acid:
LCEILQVGELPNEGRNDYHP
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.4
0.57
1
76.4
32.5
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
49
0
2.3
76.71
40

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914