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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15504539_15504621_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15504539 - 15504621
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
CCTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGCAT
U12 Branch Point Sequence:
GTTTGTTGCATC
Flanking Amino Acid:
AKFHQDTYIRIVLENSSRED
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.9
35
Major BPS
57.3
0.18
1.6
71.4
45.1
Major PPT
81.7
0.71
0.7
76.1
25.9
Minor 5ss
30.9
-2.2
3.2
31.1
43
Minor BPS
44.2
-0.4
2.2
59.33
40.4

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486