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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15506394_15510075_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15506394 - 15510075
Intron Length:
3682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
AAATCCCCAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCACCTTTAAAT
Flanking Amino Acid:
FLKAPEDKRQEMANAFAQKH
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
70
40.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
59.9
0.22
1
52.6
36.8
Minor 5ss
38.5
-1.3
2.4
46.6
41.7
Minor BPS
65.6
0.57
1.4
75.64
40.7

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000020205
15500619 - 15524104
23486