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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15509425_15510075_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15509425 - 15510075
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTGCCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGCT
U12 Branch Point Sequence:
TTTCTGCCAGCA
Flanking Amino Acid:
FLKAPEDKRQDKLLNPLDLP
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
70
40.5
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
75.3
0.57
0.9
71
34.6
Minor 5ss
38.5
-1.3
2.4
46.6
41.7
Minor BPS
38.3
-0.8
2.4
57.62
41.6

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000036380
15500619 - 15523532
22914
ENSAPLT00000025084
15500619 - 15524104
23486
ENSAPLT00000012504
15500619 - 15524104
23486