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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15512919_15513145_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15512919 - 15513145
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATCTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
ATATGTTGACCT
Flanking Amino Acid:
DMVSITFIKQIAGYVSQPMV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
69
0.43
1
65.4
40.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
46.7
-0.1
2.1
67.83
43

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486