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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15515882_15516647_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15515882 - 15516647
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAACACT
5'SS Class:
major
3'SS Sequence:
TATATATTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTATCCTTATAT
Flanking Amino Acid:
GTILQLAVSPSRAARQLMER
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69
41.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
75.3
0.57
0.9
66.4
43.8
Minor 5ss
41.9
-0.9
3
59.4
44.8
Minor BPS
70.4
0.72
1.7
86.56
38.8

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914