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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15517870_15518457_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15517870 - 15518457
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACCTC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTCTCTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.4
44.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
84.4
0.77
0.8
81.1
29.4
Minor 5ss
40.4
-1.1
3.5
58.6
46.2
Minor BPS
84
1.06
1
88.68
27.3

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000036380
15500619 - 15523532
22914