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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15523533_15524025_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15523533 - 15524025
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
CTCTGCTGACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
63.6
43.5
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
44
-0.7
3
54
44.3
Minor BPS
45.7
-0.2
2.1
63.83
47

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020205
15500619 - 15524104
23486