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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15525476_15525563_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15525476 - 15525563
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
CGGTCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAC
U12 Branch Point Sequence:
CTCCGGGTAACG
Flanking Amino Acid:
MTVGKSSKMLQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
52.3
46.1
Major BPS
46.7
-0.2
1.4
47.1
44.6
Major PPT
75.9
0.58
0.9
69.1
37
Minor 5ss
32
-2.1
3
35.4
42.3
Minor BPS
36.3
-1.1
2.7
43.71
48

Associated Gene:

Gene:
SNRPB
Ensembl Gene ID:
ENSAPLG00000011875
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012363
15525473 - 15527641
2169