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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15526793_15527216_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15526793 - 15527216
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTGGTGAACT
Flanking Amino Acid:
VRGVGGPSQQVMTPQGRGTV
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
69.6
0.44
1.1
65
45.2
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
48.7
-0
2.5
76.42
46.1

Associated Gene:

Gene:
SNRPB
Ensembl Gene ID:
ENSAPLG00000011875
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012363
15525473 - 15527641
2169