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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15529421_15529631_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15529421 - 15529631
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATAAGT
5'SS Class:
major
3'SS Sequence:
CTCTCTGTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TTTTCCCCACTC
Flanking Amino Acid:
SRKALKQYRAGPSFEDRKRL
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.1
0.41
0.9
62.1
38.6
Minor 5ss
34.8
-1.7
3
41.5
44.7
Minor BPS
49.5
-0
2.1
71.38
40.1

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555