Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15530120_15530222_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15530120 - 15530222

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TAATACCTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCATTTTAATA

Flanking Amino Acid:

QDTQRKGQMTPEERSQFEIL

Intron Amino Acid Position:

658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

83.5

29.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.4

0.53

63.1

43.3

Minor 5ss

34.3

-1.8

2.8

43.1

43.9

Minor BPS

60.8

0.33

1.3

63.8

37.1

Associated Gene:

Gene:

DDX27

Ensembl Gene ID:

ENSAPLG00000011377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011944

15528836 - 15535390

6555