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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15531250_15531359_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15531250 - 15531359
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TATCTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTGTATTCATT
Flanking Amino Acid:
LSQAQRLEALRRFKDEQIDI
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.8
38.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.4
0.62
0.9
76.7
37
Minor 5ss
38.4
-1.3
3
49.4
46.3
Minor BPS
46.9
-0.1
2.1
67.73
43.9

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555