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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15531730_15531841_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15531730 - 15531841
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
CCTGTTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACC
Flanking Amino Acid:
MLFSATMTEEVKDLASVSLK
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71
0.47
1
68.6
37.3
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
77.8
0.85
1.5
87.34
28.7

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555