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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15531942_15532079_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15531942 - 15532079
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTAGCTAGAACT
Flanking Amino Acid:
VEVLILDEADRMLDEYFEEQ
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
80.7
0.69
0.8
77.5
31.2
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
51.7
0.13
1.8
74.76
41.7

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555