About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15532231_15532553_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15532231 - 15532553
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TGCTCAGGAAGT
Flanking Amino Acid:
FSSVTTCLAVGGLDVKTQEA
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
83.4
0.75
0.8
80.7
31.3
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
41.3
-0.5
2.4
62.65
46.8

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555