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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15532728_15532822_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15532728 - 15532822
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAATTCTTGATA
Flanking Amino Acid:
DICACAATGTGKTAAFILPV
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
87.9
0.85
0.6
84
24.2
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
69
0.59
1.1
71.23
34.5

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555