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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15534534_15534846_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15534534 - 15534846
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGCC
5'SS Class:
major
3'SS Sequence:
TATTTCGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAACT
Flanking Amino Acid:
EKVRQKRKFQERETKQAKVK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
71
34.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.3
0.46
1
64.8
41
Minor 5ss
25.9
-2.8
3.3
33.7
41.8
Minor BPS
72
0.77
1.6
86.99
39.2

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555