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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15534907_15535010_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15534907 - 15535010
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CTCCTCTTACAG
Flanking Amino Acid:
ASALRQLRGKRSATTLDEKI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
69.2
0.48
1
61
37.1
Major PPT
79.9
0.67
0.8
73.8
36.8
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
46.6
-0.4
1.8
49.05
44.7

Associated Gene:

Gene:
DDX27
Ensembl Gene ID:
ENSAPLG00000011377
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011944
15528836 - 15535390
6555