Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15540103_15540305_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15540103 - 15540305

Intron Length:

203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTATGTATA

5'SS Class:

major

3'SS Sequence:

CTATTATGAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

TTTCTCTCTATT

Flanking Amino Acid:

PMHLRRAYVNITSQMKQAEE

Intron Amino Acid Position:

916

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

81.8

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

66.6

0.37

1.1

63.1

41.8

Minor 5ss

47.8

-0.2

2.5

40.7

Minor BPS

53.3

0.18

1.8

77.39

38.9

Associated Gene:

Gene:

ZNFX1

Ensembl Gene ID:

ENSAPLG00000011206

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029003

15535359 - 15548151

12793

ENSAPLT00000011686

15535359 - 15548245

12887