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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15544289_15545718_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15544289 - 15545718
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAAAT
Flanking Amino Acid:
PSVLKYENIKGVLSNLFFVE
Intron Amino Acid Position:
1301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82
0.72
0.8
79.6
32.4
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
60.3
0.4
1.6
74.71
41.6

Associated Gene:

Gene:
ZNFX1
Ensembl Gene ID:
ENSAPLG00000011206
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029003
15535359 - 15548151
12793
ENSAPLT00000011686
15535359 - 15548245
12887