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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15549323_15549992_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15549323 - 15549992
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACCTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTTGCCTACCT
Flanking Amino Acid:
FSRSPLPSAENCQKLSEDVQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.6
0.67
0.9
76.4
37.3
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
53.8
0.2
2.3
84.58
42.1

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621