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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15550075_15550510_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15550075 - 15550510
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
CAATCTCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATC
Flanking Amino Acid:
TVYYWLPKGQGTTLRKMVRD
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
60.1
0.23
1
52.4
41.3
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
67.7
0.53
1.5
75.08
35.4

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621