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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15550608_15553251_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15550608 - 15553251
Intron Length:
2644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTAACT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGAACCTAACT
Flanking Amino Acid:
TETILISPLESLSQEQLIST
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71
39
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
34.8
-1.7
3.3
50.3
45.7
Minor BPS
56.9
0.3
1.9
78.96
42.5

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621