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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15553326_15553632_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15553326 - 15553632
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TCTTCCTTTATG
Flanking Amino Acid:
ACEQVSNLPRNNQAAVVSAL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
85.8
0.81
0.8
80.8
36.6
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
68.2
0.43
1.7
71.2
42.2

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621