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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15553710_15554147_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15553710 - 15554147
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TCTGTATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GCATCTGTATTC
Flanking Amino Acid:
VKDALEEMENALVEGQDPYS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.6
39.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.5
0.66
0.9
77
36.1
Minor 5ss
34
-1.8
3.2
44.2
43.7
Minor BPS
43.9
-0.4
2.1
51.08
40.6

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621