About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15556979_15557450_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15556979 - 15557450
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAACTTT
5'SS Class:
major
3'SS Sequence:
TCTGTTCCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCTCTCATCT
Flanking Amino Acid:
NMDKIKNFTQESNRKCCLLL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
68.2
39.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
67.9
0.4
1
71.9
33.1
Minor 5ss
43.3
-0.7
3.2
55.6
48.7
Minor BPS
51.9
0.14
1.8
73.23
43.6

Associated Gene:

Gene:
CCNDBP1
Ensembl Gene ID:
ENSAPLG00000011167
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011639
15548970 - 15557590
8621