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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15558704_15559135_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15558704 - 15559135
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGATTG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTCTTTCAACA
Flanking Amino Acid:
RICDPPLIIKFPEHMVQYQP
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1.1
73.6
37.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.5
0.69
0.8
77
30.2
Minor 5ss
37.9
-1.4
3
47.9
47.7
Minor BPS
58.3
0.26
1.5
68.33
38.3

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805