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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15559948_15560947_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15559948 - 15560947
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTTTGTAATA
Flanking Amino Acid:
DITHNYKYPEGSLQEKKILD
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
62.8
41.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.7
0.67
0.9
77.6
35.5
Minor 5ss
36.4
-1.5
3.7
55.4
48.8
Minor BPS
62.4
0.39
2
78
33.3

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805