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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15561191_15561411_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15561191 - 15561411
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAACTCTTAATT
Flanking Amino Acid:
LDATCQEKSKGASFCGPAPV
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84
0.76
0.7
82.6
28.6
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
71.7
0.76
1.2
79.44
36.2

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805