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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15562024_15562404_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15562024 - 15562404
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTCTTCTGCACA
Flanking Amino Acid:
CWVFAAVMCSVLRCLGIPTR
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70.6
42.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
79.4
0.66
0.9
75.6
33
Minor 5ss
39.3
-1.2
3.5
55.1
49.1
Minor BPS
55.5
0.17
1.9
71.44
41

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805