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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15562583_15562978_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15562583 - 15562978
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCCTTAATT
Flanking Amino Acid:
IYICRTVAAMMNCDEVRGIM
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.1
0.48
1
71.8
26.9
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
86.4
1.22
0.9
91.95
30.1

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805