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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15563102_15563751_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15563102 - 15563751
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CATTTCTCAAGA
Flanking Amino Acid:
VLAQPWDFNQFEEDIVDICF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.9
0.65
0.9
77.1
37.1
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
52.8
0.08
1.9
64.13
42.4

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805