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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15563871_15564453_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15563871 - 15564453
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCTTCCTCCATT
Flanking Amino Acid:
FILLFNPWCQDDEVFLANEA
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
74.5
0.55
0.8
66.3
34.3
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
59.5
0.38
2
79.83
42.7

Associated Gene:

Gene:
EPB42
Ensembl Gene ID:
ENSAPLG00000010867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011328
15557852 - 15565656
7805