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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15573948_15574776_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15573948 - 15574776
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTCTGGCTA
5'SS Class:
weak_major
3'SS Sequence:
GGCCCCCATGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CTCTCTTTCAGT
Flanking Amino Acid:
EQLQIKYVNHSSTIEFEIIP
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.4
55.2
43.4
Major BPS
61.1
0.28
1
67
29.8
Major PPT
46.2
-0.2
1.7
46.8
35.7
Minor 5ss
38.3
-1.3
3.3
51.9
45
Minor BPS
51
0.11
2.1
70.57
47

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032149
15573819 - 15591754
17936
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874