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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15573973_15574789_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15573973 - 15574789
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
GCTGCTTGAACT
Flanking Amino Acid:
SGLLKEQLQINVAQMAPMES
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
61.1
0.28
1
67
29.8
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
60.2
0.4
1.6
73.22
43.7

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026878
15573819 - 15590312
16494