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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15576784_15577779_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15576784 - 15577779
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTGCTTCTATT
Flanking Amino Acid:
SRSIQLGSEEVKEIPFKISY
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77.3
0.61
0.9
67.3
43.1
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
47.8
-0
1.9
67.32
44.1

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874
ENSAPLT00000032149
15573819 - 15591754
17936
ENSAPLT00000026878
15573819 - 15590312
16494