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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15578125_15578797_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15578125 - 15578797
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATCTCTTAACC
Flanking Amino Acid:
DVTDNYKYPEGSLKERQVYK
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.2
0.54
1
71.7
37.1
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
72.5
0.69
1.2
73.95
35.9

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032149
15573819 - 15591754
17936
ENSAPLT00000026878
15573819 - 15590312
16494
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874