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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15580968_15581578_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15580968 - 15581578
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCCCTTACA
Flanking Amino Acid:
KTLHLTEDSVWNFHVWNESW
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.4
0.82
0.7
80.2
25.2
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
61.7
0.36
2
76.43
40.4

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026878
15573819 - 15590312
16494
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874
ENSAPLT00000032149
15573819 - 15591754
17936