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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15581715_15582523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15581715 - 15582523
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACATT
5'SS Class:
major
3'SS Sequence:
TTCTATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
GTTTACAGAACT
Flanking Amino Acid:
CWVFAGVMCTVLRSLGIPTR
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
76.8
38.2
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
83.1
0.74
0.8
77.6
35
Minor 5ss
52.7
0.09
2.6
74.6
41.7
Minor BPS
55.6
0.26
1.9
80.52
40.2

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032149
15573819 - 15591754
17936
ENSAPLT00000026878
15573819 - 15590312
16494
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874