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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15584103_15585420_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15584103 - 15585420
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAACCTTTAATA
Flanking Amino Acid:
IQQEAWNYGQFEEDILDISL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.4
0.71
0.9
78.1
40.1
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
69.6
0.61
1.2
71.04
34.6

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026878
15573819 - 15590312
16494
ENSAPLT00000025272
15573819 - 15588114
14296
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000043380
15573819 - 15588692
14874
ENSAPLT00000032149
15573819 - 15591754
17936