About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15585540_15586013_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15585540 - 15586013
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ATTCTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTC
Flanking Amino Acid:
FVLLFNPWCPNDDVYMANEK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.4
0.57
0.9
66.6
40
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
48.8
-0.1
1.8
59.03
40.5

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011037
15573819 - 15588692
14874
ENSAPLT00000032149
15573819 - 15591754
17936
ENSAPLT00000026878
15573819 - 15590312
16494
ENSAPLT00000025272
15573819 - 15588114
14296