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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15585540_15587039_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15585540 - 15587039
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTC
Flanking Amino Acid:
WDNFTFIASTDDDVYMANEK
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.4
0.57
0.9
66.6
40
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
48.8
-0.1
1.8
59.03
40.5

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043380
15573819 - 15588692
14874