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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15587202_15591729_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15587202 - 15591729
Intron Length:
4528

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCACGAGAG
5'SS Class:
weak_major
3'SS Sequence:
GCCCTGAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TAGCCCTGAAAA
Flanking Amino Acid:
LAQDEAGETNINWQSKLN
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.3
49.4
44.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
49.7
-0
1
43.7
35.3
Minor 5ss
19.7
-3.5
4
24.9
38.2
Minor BPS
56.8
0.21
1.6
64.99
40.4

Associated Gene:

Gene:
TGM6
Ensembl Gene ID:
ENSAPLG00000010591
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032149
15573819 - 15591754
17936