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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15593519_15595319_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15593519 - 15595319
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAA
5'SS Class:
major
3'SS Sequence:
GTTGGATCTGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ATTCTCAGAAAA
Flanking Amino Acid:
ILEDTNIIIKSCWLLGISVK
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
62.9
37.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
49.5
-0
1.7
55.1
44.9
Minor 5ss
36.7
-1.5
3.1
47.2
48.2
Minor BPS
47.3
-0.2
1.8
62.77
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323