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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15595484_15596149_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15595484 - 15596149
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
GTTTGAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AATGTTTGAATT
Flanking Amino Acid:
TASVDLGSKQGKHIRLKIPY
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.9
0.56
1
67.2
42.8
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
53
0.17
1.5
67.59
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323