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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15597973_15599877_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15597973 - 15599877
Intron Length:
1905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTTA
5'SS Class:
major
3'SS Sequence:
TCTTTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
GCTTTCTAGACA
Flanking Amino Acid:
KSLNISKDSTWDYHVWNESW
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.1
36.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
85
0.79
0.8
77
37.3
Minor 5ss
46.9
-0.3
3
61.1
45.7
Minor BPS
57.2
0.22
1.7
66.21
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323