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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15600014_15600221_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15600014 - 15600221
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTGTTTCTACT
Flanking Amino Acid:
CWVFAGVMCTVLRCLGIPTR
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.5
0.62
0.9
73.9
40.1
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
49.6
0.05
1.9
75.28
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323