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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15600403_15600563_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15600403 - 15600563
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GGCCTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TTTTGCCCATTC
Flanking Amino Acid:
KYVGRVISSMINGNDNDNGV
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
69.5
0.44
0.9
65.9
39.9
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
43.2
-0.5
2.3
63.2
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018539
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048409
15593294 - 15609616
16323